Publications

• A deep-learning-based score to evaluate multiple sequence alignments , bioRxiv (Cold Spring Harbor Laboratory) (2026)
• Likelihood-based evaluation of character recoding schemes for phylogenetic analysis , bioRxiv (Cold Spring Harbor Laboratory) (2025)
• Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization , Molecular Biology and Evolution (2023)
• Scalable Bayesian Divergence Time Estimation With Ratio Transformations , Systematic Biology (2023)
• Convergent evolution of polyploid genomes from across the eukaryotic tree of life , G3 Genes Genomes Genetics (2022)
• Correlations between alignment gaps and nucleotide substitution or amino acid replacement , Proceedings of the National Academy of Sciences (2022)
• Exome sequencing of hepatocellular carcinoma in lemurs identifies potential cancer drivers , Evolution Medicine and Public Health (2022)
• Measuring Phylogenetic Information of Incomplete Sequence Data , Systematic Biology (2021)
• Pedigree-based and phylogenetic methods support surprising patterns of mutation rate and spectrum in the gray mouse lemur , Heredity (2021)
• Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models , Journal of Computational Biology (2020)